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  • Top cofit genes for GFF2246 from Variovorax sp. SCN45

    cellular communication/signal transduction
    SEED: cellular communication/signal transduction

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2913 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.62
    2 GFF5640 Putative formate dehydrogenase oxidoreductase protein no 0.60
    3 GFF3446 Quinone oxidoreductase (EC 1.6.5.5) no 0.59
    4 GFF3094 17 kDa surface antigen no 0.58
    5 GFF6302 Transcriptional regulator, IclR family no 0.58
    6 GFF1682 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) no 0.57
    7 GFF5484 Protein translocase subunit YajC no 0.57
    8 GFF1994 Glutamate carboxypeptidase (EC 3.4.17.11) no 0.56
    9 GFF6107 Zinc transporter, ZIP family no 0.56
    10 GFF7368 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.56
    11 GFF4043 Copper sensory histidine kinase CusS no 0.56
    12 GFF5184 no description no 0.56
    13 GFF3520 Osmosensitive K+ channel histidine kinase KdpD 0.27 0.55
    14 GFF5114 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF no 0.55
    15 GFF7253 Mobile element protein no 0.55
    16 GFF438 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) no 0.55
    17 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) no 0.54
    18 GFF6696 Ubiquinol-cytochrome C reductase, cytochrome C1 subunit 0.24 0.53
    19 GFF5075 Two-component system sensor histidine kinase Dtpsy_0212 no 0.53
    20 GFF6695 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) 0.32 0.53

    Or look for negative cofitness