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Gene
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Cofit
Protein
Homologs
Top cofit genes for GFF2215 from
Variovorax sp. SCN45
L,D-transpeptidase
SEED: ErfK/YbiS/YcfS/YnhG family protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF4661
no description
no
0.59
2
GFF5793
Low-affinity inorganic phosphate transporter
no
0.54
3
GFF51
hypothetical protein
no
0.53
4
GFF2520
UPF0053 inner membrane protein YtfL
no
0.53
5
GFF4150
Salicylate hydroxylase (EC 1.14.13.1)
no
0.52
6
GFF6755
hypothetical protein
no
0.52
7
GFF5584
Cyclic-di-GMP-binding biofilm dispersal mediator protein
no
0.51
8
GFF2726
hypothetical protein
no
0.51
9
GFF2643
Oxidoreductase, short-chain dehydrogenase/reductase family
no
0.51
10
GFF5123
no description
no
0.50
11
GFF1334
Cocaine esterase (EC 3.1.1.-)
no
0.50
12
GFF1939
hypothetical protein
no
0.48
13
GFF6367
T6SS component TssF (ImpG/VasA)
no
0.48
14
GFF5938
T6SS component TssF (ImpG/VasA)
no
0.48
15
GFF3393
Benzoate ABC transporter, ATP-binding protein 2
no
0.48
16
GFF7248
no description
no
0.47
17
GFF7141
FIG00537874: hypothetical protein
no
0.47
18
GFF810
Glutathione S-transferase (EC 2.5.1.18)
no
0.47
19
GFF6020
UPF0246 protein YaaA
no
0.46
20
GFF2683
Protein containing domains DUF404, DUF407
no
0.46
Or look for
negative cofitness