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  • Top cofit genes for GFF2210 from Variovorax sp. SCN45

    Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
    SEED: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
    KEGG: pilus assembly protein CpaC

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4509 no description no 0.68
    2 GFF4485 FIG00715336: hypothetical protein no 0.67
    3 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) no 0.66
    4 GFF2379 Serine/threonine protein kinase no 0.65
    5 GFF2322 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) no 0.65
    6 GFF5185 FIG00732904: hypothetical protein no 0.65
    7 GFF5394 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) no 0.64
    8 GFF3828 hypothetical protein no 0.63
    9 GFF5582 BUG/TctC family periplasmic protein no 0.63
    10 GFF6110 N-acyl-D-amino-acid deacylase (EC 3.5.1.81) no 0.62
    11 GFF2510 Type IV fimbrial assembly, ATPase PilB no 0.61
    12 GFF3825 Autolysin sensor kinase (EC 2.7.3.-) no 0.61
    13 GFF5057 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) no 0.61
    14 GFF2151 twitching motility protein PilG no 0.61
    15 GFF5490 Uncharacterized protein with LysM domain, COG1652 no 0.60
    16 GFF2182 Inner membrane component of TAM transport system no 0.60
    17 GFF2154 twitching motility protein PilJ no 0.60
    18 GFF5320 Type IV pilus biogenesis protein PilN no 0.60
    19 GFF452 Chloride channel protein no 0.60
    20 GFF5322 Type IV pilus biogenesis protein PilP no 0.60

    Or look for negative cofitness