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  • Top cofit genes for PS417_11245 from Pseudomonas simiae WCS417

    RNA polymerase subunit sigma-24
    SEED: Extracytoplasmic function (ECF) sigma factor VreI
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_12120 IclR family transcriptional regulator no 0.28
    2 PS417_21430 3-oxoacyl-ACP synthase no 0.26
    3 PS417_07565 hypothetical protein no 0.26
    4 PS417_01915 ATP-dependent protease ATP-binding subunit HslU no 0.26
    5 PS417_06680 nuclease PIN no 0.25
    6 PS417_22565 formyltetrahydrofolate deformylase no 0.25
    7 PS417_16510 Clp protease ClpX no 0.25
    8 PS417_27865 LysR family transcriptional regulator no 0.24
    9 PS417_11760 Fis family transcriptional regulator 0.39 0.24
    10 PS417_15820 universal stress protein UspA no 0.24
    11 PS417_06940 MFS transporter permease no 0.24
    12 PS417_25840 SpoVR family protein no 0.24
    13 PS417_09685 glucoamylase no 0.24
    14 PS417_12940 sugar ABC transporter substrate-binding protein no 0.23
    15 PS417_02865 peptidase no 0.23
    16 PS417_27990 hypothetical protein no 0.23
    17 PS417_08135 3-phosphoshikimate 1-carboxyvinyltransferase no 0.23
    18 PS417_19885 flagellar basal body rod protein FlgG no 0.23
    19 PS417_08930 hypothetical protein no 0.23
    20 PS417_28450 XRE family transcriptional regulator no 0.23

    Or look for negative cofitness