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  • Top cofit genes for GFF2194 from Variovorax sp. SCN45

    Tol-Pal system peptidoglycan-associated lipoprotein PAL
    SEED: 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2151 twitching motility protein PilG 0.66 0.63
    2 GFF4485 FIG00715336: hypothetical protein 0.65 0.63
    3 GFF2379 Serine/threonine protein kinase 0.64 0.63
    4 GFF3307 FIG01161751: hypothetical protein 0.65 0.62
    5 GFF2154 twitching motility protein PilJ 0.68 0.61
    6 GFF5145 hypothetical protein no 0.61
    7 GFF2508 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) 0.69 0.60
    8 GFF5419 Type IV pilus biogenesis protein PilE no 0.59
    9 GFF5487 Thymidine phosphorylase (EC 2.4.2.4) 0.54 0.59
    10 GFF2509 Type IV fimbrial assembly protein PilC 0.67 0.59
    11 GFF5490 Uncharacterized protein with LysM domain, COG1652 0.66 0.59
    12 GFF5414 hypothetical protein no 0.58
    13 GFF5322 Type IV pilus biogenesis protein PilP 0.65 0.58
    14 GFF5417 hypothetical protein no 0.58
    15 GFF5323 Type IV pilus biogenesis protein PilQ 0.65 0.58
    16 GFF6681 TonB-dependent siderophore receptor no 0.58
    17 GFF33 Type IV pilus biogenesis protein PilZ 0.65 0.58
    18 GFF2510 Type IV fimbrial assembly, ATPase PilB 0.66 0.58
    19 GFF5415 Type IV fimbrial biogenesis protein PilV no 0.57
    20 GFF5871 hypothetical protein no 0.57

    Or look for negative cofitness