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  • Top cofit genes for GFF2157 from Variovorax sp. SCN45

    UPF0301 protein YqgE
    SEED: UPF0301 protein YqgE
    KEGG: putative transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6572 Conjugative transfer protein TrbG no 0.53
    2 GFF803 MutT/Nudix family protein 0.25 0.52
    3 GFF4645 GGDEF domain protein no 0.51
    4 GFF1350 Quinone oxidoreductase (EC 1.6.5.5) no 0.50
    5 GFF3366 Septum site-determining protein MinD 0.54 0.50
    6 GFF1157 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like no 0.49
    7 GFF972 no description no 0.49
    8 GFF3659 Two-component transcriptional response regulator, OmpR family no 0.49
    9 GFF2256 Uncharacterized protein YcgL no 0.48
    10 GFF4136 hypothetical protein no 0.47
    11 GFF3634 hypothetical protein no 0.46
    12 GFF6788 Multicopper oxidase no 0.46
    13 GFF4261 RNA polymerase ECF-type sigma factor 0.14 0.45
    14 GFF6685 LSU ribosomal protein L36p @ LSU ribosomal protein L36p, zinc-independent 0.29 0.45
    15 GFF1440 Multidomain signal transduction protein including CheB-like methylesterase, CheR-like methyltransferase and BaeS-like histidine kinase no 0.45
    16 GFF4252 hypothetical protein no 0.45
    17 GFF7247 no description no 0.45
    18 GFF677 FIG00931906: hypothetical protein no 0.44
    19 GFF3830 Uncharacterized MFS-type transporter no 0.44
    20 GFF3756 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system 0.51 0.44

    Or look for negative cofitness