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  • Top cofit genes for PS417_10995 from Pseudomonas simiae WCS417

    GntR family transcriptional regulator
    SEED: Transcriptional regulator of the arabinose operon in Shewanella, GntR family

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_04180 GntR family transcriptional regulator 0.65 0.32
    2 PS417_17515 GfdT protein 0.25 0.31
    3 PS417_12610 RNA polymerase sigma factor no 0.30
    4 PS417_21040 sulfurylase 0.59 0.30
    5 PS417_06365 RNA polymerase sigma factor 0.20 0.29
    6 PS417_11845 RpiR family transcriptional regulator 0.67 0.28
    7 PS417_03925 nicotinate-nucleotide pyrophosphorylase 0.36 0.28
    8 PS417_27475 membrane protein no 0.27
    9 PS417_22385 quinolinate synthase A 0.37 0.27
    10 PS417_27605 hypothetical protein no 0.26
    11 PS417_12290 sulfite reductase 0.73 0.26
    12 PS417_22230 class I peptide chain release factor no 0.26
    13 PS417_21750 acetyl-CoA synthetase 0.84 0.25
    14 PS417_21320 transcriptional regulator 0.58 0.25
    15 PS417_25920 pyrroloquinoline quinone biosynthesis protein PqqF 0.35 0.25
    16 PS417_17510 histidine kinase no 0.25
    17 PS417_17045 hypothetical protein no 0.24
    18 PS417_16465 sirohydrochlorin ferrochelatase 0.75 0.24
    19 PS417_23950 polynucleotide phosphorylase/polyadenylase 0.49 0.24
    20 PS417_21035 multidrug transporter no 0.24

    Or look for negative cofitness