Top cofit genes for GFF2153 from Variovorax sp. SCN45

type IV pili signal transduction protein PilI
SEED: type IV pili signal transduction protein PilI
KEGG: twitching motility protein PilI

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF3743		Twitching motility protein PilT	no	0.90
2	GFF5128		hypothetical protein	no	0.87
3	GFF6290		RNA polymerase sigma-54 factor RpoN	no	0.86
4	GFF6075		Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB	0.46	0.85
5	GFF2519		FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	no	0.84
6	GFF3886		Putative transmembrane protein	no	0.84
7	GFF4439		Probable transmembrane protein	no	0.84
8	GFF2155		Signal transduction histidine kinase CheA	no	0.83
9	GFF5416		Type IV fimbrial biogenesis protein PilW	no	0.82
10	GFF4432		Two-component system response regulator protein	0.36	0.82
11	GFF993		Type IV pilus biogenesis protein PilF	0.59	0.82
12	GFF5418		Type IV fimbrial biogenesis protein PilY1	no	0.82
13	GFF5417		hypothetical protein	no	0.81
14	GFF5319		Type IV pilus biogenesis protein PilM	0.35	0.81
15	GFF5321		Type IV pilus biogenesis protein PilO	0.48	0.81
16	GFF5419		Type IV pilus biogenesis protein PilE	0.49	0.81
17	GFF3068		FIG00538108: hypothetical protein	0.33	0.80
18	GFF5414		hypothetical protein	no	0.80
19	GFF2510		Type IV fimbrial assembly, ATPase PilB	0.57	0.80
20	GFF3826		Response regulator receiver:LytTr DNA-binding region	0.64	0.80

Or look for negative cofitness