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  • Top cofit genes for GFF215 from Variovorax sp. SCN45

    RNA polymerase sigma-54 factor RpoN
    SEED: RNA polymerase sigma-54 factor RpoN
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2480 Urease accessory protein UreG no 0.62
    2 GFF4916 FIG00959407: hypothetical protein no 0.60
    3 GFF5916 T6SS component TssA (ImpA) no 0.59
    4 GFF3562 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) 0.85 0.59
    5 GFF4654 Acid phosphatase (EC 3.1.3.2) no 0.58
    6 GFF1546 Tripartite tricarboxylate transporter TctA family no 0.56
    7 GFF3146 no description no 0.55
    8 GFF1752 Cysteine dioxygenase (EC 1.13.11.20) no 0.52
    9 GFF3979 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-) no 0.52
    10 GFF3779 hypothetical protein no 0.51
    11 GFF800 hypothetical protein no 0.51
    12 GFF4967 Glutathione S-transferase family protein no 0.51
    13 GFF6633 hypothetical protein no 0.50
    14 GFF3030 Uncharacterized protein ImpA 0.41 0.50
    15 GFF4120 no description no 0.50
    16 GFF4099 Ser/Thr protein phosphatase family protein no 0.49
    17 GFF1943 DNA polymerase III alpha subunit (EC 2.7.7.7) no 0.49
    18 GFF461 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.49
    19 GFF5373 Xylose isomerase-like TIM-barrel protein KPN_00539 no 0.49
    20 GFF6226 ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates) no 0.49

    Or look for negative cofitness