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  • Top cofit genes for PS417_10950 from Pseudomonas simiae WCS417

    AraC family transcriptional regulator
    SEED: Xylose activator XylR (AraC family)
    KEGG: LacI family transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_10945 Xylose isomerase (EC 5.3.1.5) (from data) 0.94 0.53
    2 PS417_12690 xylulose kinase 0.95 0.22
    3 PS417_22675 histidine kinase 0.73 0.18
    4 PS417_11040 aldose epimerase 0.78 0.17
    5 PS417_04675 deoxyribonuclease no 0.17
    6 PS417_09725 transporter 0.54 0.17
    7 PS417_09700 transaldolase no 0.16
    8 PS417_02140 hypothetical protein 0.51 0.16
    9 PS417_22095 class V aminotransferase no 0.16
    10 PS417_09955 hypothetical protein no 0.15
    11 PS417_22135 glucose/xylose ABC transporter, permease component 1 (from data) 0.84 0.15
    12 PS417_19125 LysR family transcriptional regulator no 0.15
    13 PS417_22140 glucose/xylose ABC transporter, permease component 2 (from data) 0.86 0.15
    14 PS417_20165 hypothetical protein no 0.14
    15 PS417_22130 glucose/xylose ABC transporter, ATPase component (from data) 0.71 0.14
    16 PS417_22145 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) 0.91 0.14
    17 PS417_05300 glucose dehydrogenase 0.33 0.14
    18 PS417_14450 chemotaxis protein no 0.14
    19 PS417_26730 pyrroline-5-carboxylate reductase 0.31 0.14
    20 PS417_22680 chemotaxis protein CheY 0.75 0.14

    Or look for negative cofitness