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  • Top cofit genes for GFF2127 from Variovorax sp. SCN45

    Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
    SEED: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6284 Cytochrome b561 no 0.62
    2 GFF3772 Arginase (EC 3.5.3.1) no 0.62
    3 GFF3704 FIG00536957: hypothetical protein no 0.56
    4 GFF2363 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.52) no 0.56
    5 GFF1553 no description no 0.56
    6 GFF5353 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) no 0.54
    7 GFF6913 Ser-tRNA(Ala) deacylase @ Gly-tRNA(Ala) deacylase no 0.54
    8 GFF356 L-asparaginase (EC 3.5.1.1) no 0.53
    9 GFF461 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.52
    10 GFF4429 Inner membrane protein YpjD no 0.52
    11 GFF4166 Cytidine deaminase (EC 3.5.4.5) no 0.51
    12 GFF4121 no description no 0.51
    13 GFF4634 Transketolase, C-terminal section (EC 2.2.1.1) no 0.51
    14 GFF4606 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) no 0.50
    15 GFF5449 Probable lipoprotein YiaD no 0.49
    16 GFF881 Transcriptional regulator ligR, LysR family no 0.49
    17 GFF4636 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) no 0.49
    18 GFF4010 no description no 0.49
    19 GFF6454 Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit no 0.49
    20 GFF2365 Altronate dehydratase (EC 4.2.1.7) no 0.49

    Or look for negative cofitness