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  • Top cofit genes for GFF2120 from Variovorax sp. SCN45

    Type IV fimbrial biogenesis protein PilX
    SEED: Type IV fimbrial biogenesis protein PilX
    KEGG: type IV pilus assembly protein PilX

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2680 Protein of unknown function DUF1058 no 0.61
    2 GFF110 pyridoxal-phosphate dependent enzyme family protein no 0.60
    3 GFF3974 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.59
    4 GFF7291 Magnesium and cobalt transport protein CorA no 0.59
    5 GFF3127 no description no 0.59
    6 GFF2 Transcription accessory protein (S1 RNA-binding domain) no 0.59
    7 GFF5142 no description no 0.58
    8 GFF5984 L-lactate dehydrogenase no 0.57
    9 GFF2357 DNA repair protein RecN no 0.57
    10 GFF862 hypothetical protein no 0.57
    11 GFF4048 Cobalt/zinc/cadmium efflux RND transporter, outer membrane protein CzcC no 0.57
    12 GFF1917 ATP-dependent RNA helicase Bcep18194_A5658 no 0.55
    13 GFF3842 Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives) no 0.55
    14 GFF1762 no description no 0.55
    15 GFF431 Esterase/lipase no 0.55
    16 GFF6355 T6SS secretion lipoprotein TssJ (VasD) no 0.55
    17 GFF1948 Phage integrase no 0.55
    18 GFF1627 ABC-type siderophore export system, fused ATPase and permease components no 0.54
    19 GFF4362 BUG/TctC family periplasmic protein no 0.54
    20 GFF7266 L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16) no 0.54

    Or look for negative cofitness