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  • Top cofit genes for PS417_10520 from Pseudomonas simiae WCS417

    succinyl-CoA:3-ketoacid-CoA transferase
    SEED: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
    KEGG: 3-oxoacid CoA-transferase subunit B

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_10515 acetyl-CoA acetyltransferase 0.68 0.45
    2 PS417_13970 glycerate kinase no 0.42
    3 PS417_13975 CdaR family transcriptional regulator no 0.40
    4 PS417_07245 2-deoxy-D-ribonate 3-dehydrogenase (from data) no 0.39
    5 PS417_07250 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) no 0.39
    6 PS417_07265 2-deoxy-D-ribonate transporter 1 (from data) no 0.34
    7 PS417_07260 2-deoxy-D-ribonate transporter 2 (from data) no 0.34
    8 PS417_22960 hypothetical protein no 0.34
    9 PS417_10530 LysR family transcriptional regulator 0.75 0.33
    10 PS417_07240 Transcriptional regulator of deoxyribose catabolism (from data) no 0.32
    11 PS417_10390 RNA polymerase subunit sigma24 no 0.29
    12 PS417_12205 hypothetical protein no 0.28
    13 PS417_16990 acyl-CoA dehydrogenase 0.42 0.28
    14 PS417_27025 DNA-binding protein no 0.27
    15 PS417_14005 4-hydroxyphenylpyruvate dioxygenase 0.83 0.26
    16 PS417_12200 microcin ABC transporter permease 0.42 0.25
    17 PS417_06605 leucine/isoleucine/valine transporter permease subunit 0.75 0.24
    18 PS417_16510 Clp protease ClpX 0.35 0.24
    19 PS417_06955 membrane protein no 0.24
    20 PS417_26235 (Fe-S)-binding protein 0.41 0.23

    Or look for negative cofitness