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  • Top cofit genes for GFF2044 from Variovorax sp. SCN45

    Efflux ABC transporter, permease protein
    SEED: ABC transporter permease protein
    KEGG: ABC-2 type transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5015 Putative stomatin/prohibitin-family membrane protease subunit aq_911 no 0.53
    2 GFF288 no description no 0.51
    3 GFF5785 FIG00931285: hypothetical protein no 0.48
    4 GFF104 General secretion pathway protein D no 0.47
    5 GFF2458 CzcABC family efflux RND transporter, membrane fusion protein no 0.47
    6 GFF5636 Molybdenum ABC transporter, substrate-binding protein ModA no 0.45
    7 GFF1437 Transcriptional regulator, LysR family no 0.45
    8 GFF1409 hypothetical protein no 0.45
    9 GFF4846 Conjugative transfer protein TrbE no 0.45
    10 GFF5147 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) no 0.44
    11 GFF6158 carbon monoxide dehydrogenase E protein no 0.42
    12 GFF4400 hypothetical protein no 0.42
    13 GFF1650 NmrA-like no 0.42
    14 GFF3422 Lipoprotein-related protein no 0.42
    15 GFF1405 hypothetical protein no 0.42
    16 GFF5296 putative iron-regulated membrane protein no 0.41
    17 GFF4786 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.41
    18 GFF7302 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) no 0.40
    19 GFF4534 Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like no 0.40
    20 GFF2664 FIG002343: hypothetical protein no 0.40

    Or look for negative cofitness