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  • Top cofit genes for PS417_10390 from Pseudomonas simiae WCS417

    RNA polymerase subunit sigma24
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_10520 succinyl-CoA:3-ketoacid-CoA transferase no 0.29
    2 PS417_16085 LysR family transcriptional regulator no 0.28
    3 PS417_22895 tyrosine recombinase XerD no 0.23
    4 PS417_14110 2-nitropropane dioxygenase no 0.23
    5 PS417_18730 ABC transporter permease no 0.22
    6 PS417_08540 RNA helicase no 0.22
    7 PS417_02975 3-dehydroquinate dehydratase no 0.22
    8 PS417_03830 protein disaggregation chaperone no 0.21
    9 PS417_00405 DNA polymerase I no 0.21
    10 PS417_28010 pyridine nucleotide-disulfide oxidoreductase no 0.21
    11 PS417_02950 tRNA-dihydrouridine synthase B no 0.21
    12 PS417_08955 pimeloyl-CoA dehydrogenase no 0.20
    13 PS417_12205 hypothetical protein no 0.20
    14 PS417_05635 membrane protein no 0.20
    15 PS417_27245 aminotransferase DegT no 0.20
    16 PS417_23530 1,2-oxophytodienoate reductase no 0.20
    17 PS417_10495 lysine transporter LysE no 0.20
    18 PS417_14835 amidase no 0.20
    19 PS417_15325 type VI secretion protein no 0.19
    20 PS417_15940 mechanosensitive ion channel protein MscS no 0.19

    Or look for negative cofitness