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  • Top cofit genes for GFF202 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: LysR-family transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF17 hypothetical protein 0.22 0.58
    2 GFF4066 Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP) 0.27 0.58
    3 GFF2970 BUG/TctC family periplasmic protein no 0.56
    4 GFF1276 Sarcosine oxidase no 0.53
    5 GFF4036 hypothetical protein no 0.52
    6 GFF2248 Transcriptional regulatory protein RtcR no 0.52
    7 GFF5703 pyridoxal-phosphate dependent enzyme family protein no 0.52
    8 GFF34 Uncharacterized metal-dependent hydrolase YcfH no 0.52
    9 GFF1418 Transcriptional regulator, LysR family no 0.51
    10 GFF6576 Conjugative transfer protein TrbE no 0.50
    11 GFF4038 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family no 0.50
    12 GFF414 Malate dehydrogenase (EC 1.1.1.37) no 0.49
    13 GFF2394 MotA/TolQ/ExbB proton channel family protein no 0.49
    14 GFF1912 Transcriptional regulator, LysR family 0.19 0.48
    15 GFF7159 Putative reductase no 0.47
    16 GFF2608 Transcriptional regulator FrcR for fructose utilization, ROK family no 0.46
    17 GFF5440 RNA polymerase ECF-type sigma factor no 0.46
    18 GFF1876 Dihydrodipicolinate synthase family no 0.45
    19 GFF4011 no description no 0.45
    20 GFF1703 DNA for 3-methylaspartate ammonia-lyase, glutamate mutase no 0.45

    Or look for negative cofitness