Top cofit genes for GFF2016 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)
SEED: Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)
KEGG: thiol:disulfide interchange protein DsbD

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF1058		NadR transcriptional regulator / Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22)	0.53	0.95
2	GFF3054		Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	0.84	0.92
3	GFF662		Pectinesterase (EC 3.1.1.11)	0.90	0.90
4	GFF2303		Putative uncharacterized protein YiiQ	0.84	0.88
5	GFF1423		Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	0.65	0.87
6	GFF3397		Transcription-repair coupling factor	0.65	0.87
7	GFF4103		probable exported protein STY0357	0.85	0.87
8	GFF3886		UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	0.61	0.86
9	GFF4839		BarA sensory histidine kinase (= VarS = GacS)	0.67	0.86
10	GFF1311		FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated	0.75	0.85
11	GFF1396		Glucose-6-phosphate isomerase (EC 5.3.1.9)	0.52	0.84
12	GFF3794		SanA protein	0.69	0.84
13	GFF3613		Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps	0.64	0.83
14	GFF3040		Biosynthetic arginine decarboxylase (EC 4.1.1.19)	0.41	0.83
15	GFF3379		FIG004453: protein YceG like	0.83	0.83
16	GFF3874		Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-)	no	0.83
17	GFF3566		major outer membrane lipoprotein	0.53	0.82
18	GFF880		Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)	0.95	0.82
19	GFF2819		Ribonuclease D (EC 3.1.26.3)	no	0.82
20	GFF4491		Enterobactin esterase	no	0.81

Or look for negative cofitness