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  • Top cofit genes for GFF1996 from Variovorax sp. SCN45

    Indoleacetamide hydrolase (EC 3.5.1.-)
    SEED: Indoleacetamide hydrolase (EC 3.5.1.-)
    KEGG:

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1253 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.65
    2 GFF3551 MoxR-like ATPases no 0.58
    3 GFF4983 fumarate reductase/succinate dehydrogenase flavoprotein-like no 0.57
    4 GFF4169 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) no 0.55
    5 GFF4604 TesB-like acyl-CoA thioesterase 2 no 0.52
    6 GFF1051 no description no 0.50
    7 GFF2448 Acyl-CoA dehydrogenase no 0.50
    8 GFF5814 Rhodanese-related sulfurtransferase no 0.50
    9 GFF1348 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.49
    10 GFF1131 putative fatty acid desaturase no 0.48
    11 GFF3577 Transcriptional regulator, LysR family no 0.48
    12 GFF1903 Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching no 0.48
    13 GFF1198 no description no 0.48
    14 GFF4242 TRAP-type C4-dicarboxylate transport system, periplasmic component 0.27 0.47
    15 GFF1330 UPF0061 protein YdiU no 0.47
    16 GFF2355 A/G-specific adenine glycosylase (EC 3.2.2.-) no 0.47
    17 GFF2410 Intracellular protease no 0.47
    18 GFF6435 no description no 0.46
    19 GFF2950 Arsenite/antimonite:H+ antiporter ArsB 0.45 0.46
    20 GFF1772 Putative Rieske (2Fe-2S) family oxidoreductase, large subunit no 0.46

    Or look for negative cofitness