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Gene
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Cofit
Protein
Homologs
Top cofit genes for GFF1989 from
Variovorax sp. SCN45
MBL-fold metallo-hydrolase superfamily
SEED: SoxH protein, homolog
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF4153
ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate)
no
0.51
2
GFF96
RNA polymerase ECF-type sigma factor
no
0.51
3
GFF647
Two-component system response regulator QseB
no
0.50
4
GFF4915
hypothetical protein
no
0.48
5
GFF5200
L-arabonate dehydratase (EC 4.2.1.25)
no
0.47
6
GFF472
hypothetical protein
no
0.47
7
GFF6461
Thioesterase superfamily
no
0.47
8
GFF3225
hypothetical protein
no
0.46
9
GFF7118
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)
no
0.45
10
GFF4009
D-amino acid dehydrogenase (EC 1.4.99.6)
no
0.45
11
GFF2195
FIG00732904: hypothetical protein
no
0.45
12
GFF34
Uncharacterized metal-dependent hydrolase YcfH
0.24
0.44
13
GFF144
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
0.36
0.44
14
GFF1562
Transcriptional regulator, LysR family
no
0.44
15
GFF3171
Uncharacterized protein conserved in bacteria
no
0.44
16
GFF4539
no description
no
0.43
17
GFF3866
HtrA protease/chaperone protein
no
0.43
18
GFF5527
Asl0046 protein
0.63
0.43
19
GFF2443
Iron-sulfur cluster regulator IscR
no
0.42
20
GFF5219
2-aminoethylphosphonate ABC transporter permease protein
no
0.42
Or look for
negative cofitness