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  • Top cofit genes for GFF1890 from Variovorax sp. SCN45

    3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)
    SEED: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)
    KEGG: 3-carboxy-cis,cis-muconate cycloisomerase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3090 Colicin V production protein no 0.61
    2 GFF6528 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) no 0.61
    3 GFF7376 Transcriptional regulator, LysR family 0.39 0.61
    4 GFF445 Ferrichrome transport ATP-binding protein FhuC no 0.60
    5 GFF1288 Sulfate transport system permease protein CysT 0.18 0.60
    6 GFF5667 Transcriptional regulator, LysR family no 0.60
    7 GFF2658 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC) 0.37 0.59
    8 GFF2032 Excinuclease ABC subunit A, dimeric form no 0.59
    9 GFF5823 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) no 0.59
    10 GFF7222 Coenzyme F390 synthetase no 0.58
    11 GFF2498 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) 0.38 0.58
    12 GFF7293 Ribosome hibernation promoting factor Hpf no 0.58
    13 GFF1262 Rhodanese-related sulfurtransferase no 0.58
    14 GFF6287 no description no 0.58
    15 GFF1173 P-hydroxybenzoate hydroxylase (EC 1.14.13.2) 0.87 0.58
    16 GFF3425 no description no 0.58
    17 GFF6192 Amidase family protein Atu4441 no 0.58
    18 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) no 0.58
    19 GFF1045 Putative phosphatase 0.34 0.57
    20 GFF3943 Poly(A) polymerase (EC 2.7.7.19) 0.19 0.57

    Or look for negative cofitness