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  • Top cofit genes for GFF189 from Sphingobium sp. HT1-2

    Conjugative transfer protein TrbC
    SEED: Conjugative transfer protein TrbC
    KEGG: type IV secretion system protein VirB2

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1567 Efflux ABC transporter, permease protein no 0.86
    2 GFF1732 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) no 0.81
    3 GFF1810 hypothetical protein no 0.79
    4 GFF1417 C-4 methylsterol oxidase no 0.78
    5 GFF3301 hypothetical protein no 0.78
    6 GFF1112 Two-component transcriptional response regulator, LuxR family no 0.76
    7 GFF3347 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) no 0.74
    8 GFF1488 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.74
    9 GFF927 hypothetical protein no 0.73
    10 GFF373 hypothetical protein no 0.73
    11 GFF2570 Uncharacterized amino acid permease, GabP family no 0.71
    12 GFF4229 hypothetical protein no 0.70
    13 GFF3575 hypothetical protein no 0.70
    14 GFF2173 hypothetical protein no 0.70
    15 GFF1780 hypothetical protein no 0.70
    16 GFF1842 hypothetical protein no 0.69
    17 GFF2931 hypothetical protein no 0.69
    18 GFF4625 RND efflux system, inner membrane transporter no 0.69
    19 GFF5407 hypothetical protein no 0.69
    20 GFF2735 Uncharacterized MFS-type transporter no 0.69

    Or look for negative cofitness