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  • Top cofit genes for GFF188 from Sphingobium sp. HT1-2

    Conjugative transfer protein TrbB
    SEED: Conjugative transfer protein TrbB
    KEGG: type IV secretion system protein VirB11

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4060 GCN5-related N-acetyltransferase no 0.79
    2 GFF1984 hypothetical protein no 0.76
    3 GFF4627 hypothetical protein no 0.73
    4 GFF1995 sigma-54 dependent DNA-binding response regulator no 0.72
    5 GFF5333 sigma factor no 0.71
    6 GFF4687 Protein often near L-alanine-DL-glutamate epimerase (cell wall recycling) 0.41 0.70
    7 GFF2048 Transcriptional regulator, MerR family no 0.69
    8 GFF4895 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC) no 0.66
    9 GFF3414 FIG018171: hypothetical protein of Cupin superfamily no 0.66
    10 GFF4853 hypothetical protein no 0.66
    11 GFF1864 hypothetical protein no 0.65
    12 GFF2466 hypothetical protein no 0.65
    13 GFF2802 DNA gyrase subunit A no 0.64
    14 GFF4293 hypothetical protein no 0.64
    15 GFF2090 Transamidase GatB domain protein no 0.63
    16 GFF4025 hypothetical protein no 0.61
    17 GFF1786 hypothetical protein no 0.61
    18 GFF4790 Hemerythrin domain protein no 0.61
    19 GFF5149 hypothetical protein no 0.60
    20 GFF1271 Hydrogen peroxide-inducible genes activator => OxyR no 0.60

    Or look for negative cofitness