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  • Top cofit genes for GFF1867 from Variovorax sp. SCN45

    ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)
    KEGG: polar amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6221 T6SS associated component TagF (ImpM) no 0.59
    2 GFF3715 Probable malonic semialdehyde reductase RutE (EC 1.1.1.298) no 0.49
    3 GFF7266 L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16) no 0.48
    4 GFF1629 Ferric reductase (1.6.99.14) no 0.48
    5 GFF1461 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.47
    6 GFF2788 FIG003461: hypothetical protein no 0.46
    7 GFF5940 T6SS associated component TagJ (ImpE) no 0.46
    8 GFF4765 ADP-ribose pyrophosphatase (EC 3.6.1.13) no 0.46
    9 GFF4782 Pyridoxal-5'-phosphate-dependent enzyme beta superfamily (fold type II) no 0.45
    10 GFF3932 Acetyltransferase, GNAT family no 0.45
    11 GFF1912 Transcriptional regulator, LysR family no 0.45
    12 GFF1692 Two-component system sensor histidine kinase no 0.45
    13 GFF2177 no description no 0.45
    14 GFF4911 Nudix-like NDP and NTP phosphohydrolase NudJ 0.28 0.45
    15 GFF5082 Uncharacterized MFS-type transporter no 0.45
    16 GFF96 RNA polymerase ECF-type sigma factor no 0.44
    17 GFF2646 Acetyl-CoA acetyltransferase no 0.44
    18 GFF1793 hypothetical protein no 0.44
    19 GFF887 Small uncharacterized protein Bpro_4170 no 0.44
    20 GFF2340 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.43

    Or look for negative cofitness