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  • Top cofit genes for GFF1858 from Variovorax sp. SCN45

    ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines)
    SEED: Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2595 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) no 0.55
    2 GFF6201 Oxidoreductase, aldo/keto reductase family no 0.52
    3 GFF7354 1,2-phenylacetyl-CoA epoxidase, subunit B (EC 1.14.13.149) no 0.49
    4 GFF5303 Tricarboxylate transport transcriptional regulator TctD no 0.49
    5 GFF7127 Mobile element protein no 0.45
    6 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) no 0.45
    7 GFF3194 no description no 0.45
    8 GFF6786 CopG protein no 0.45
    9 GFF1064 Transcriptional regulator, GntR family no 0.45
    10 GFF2503 DNA gyrase inhibitor YacG no 0.44
    11 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) no 0.42
    12 GFF2364 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) no 0.41
    13 GFF3990 hypothetical protein no 0.41
    14 GFF3025 Proton/sodium-glutamate symport protein no 0.41
    15 GFF791 RNA polymerase sigma factor RpoE no 0.40
    16 GFF4906 hypothetical protein no 0.40
    17 GFF7330 Transcription elongation factor no 0.40
    18 GFF5165 Transcriptional regulator, LysR family no 0.40
    19 GFF5654 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) 0.70 0.40
    20 GFF2413 hypothetical protein no 0.40

    Or look for negative cofitness