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  • Top cofit genes for PS417_09410 from Pseudomonas simiae WCS417

    isopropylmalate isomerase
    SEED: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
    KEGG: 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_11870 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) no 0.23
    2 PS417_14040 alkyl hydroperoxide reductase 0.45 0.21
    3 PS417_23620 epimerase no 0.21
    4 PS417_13925 hypothetical protein no 0.20
    5 PS417_22565 formyltetrahydrofolate deformylase no 0.19
    6 PS417_21260 hypothetical protein no 0.19
    7 PS417_14475 2-hydroxyacid dehydrogenase no 0.19
    8 PS417_28075 phosphate ABC transporter permease no 0.19
    9 PS417_26950 LysR family transcriptional regulator 0.22 0.19
    10 PS417_18605 LysR family transcriptional regulator no 0.19
    11 PS417_28080 phosphate ABC transporter permease no 0.19
    12 PS417_13020 2,5-dihydroxypyridine 5,6-dioxygenase no 0.19
    13 PS417_22590 membrane protein no 0.18
    14 PS417_11895 Inositol transport system permease protein (from data) no 0.18
    15 PS417_20470 hypothetical protein no 0.18
    16 PS417_23045 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) 0.12 0.18
    17 PS417_28070 phosphate ABC transporter ATP-binding protein no 0.18
    18 PS417_14675 aldehyde dehydrogenase no 0.18
    19 PS417_26585 malonate carrier protein 0.26 0.17
    20 PS417_00465 hypothetical protein no 0.17

    Or look for negative cofitness