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  • Top cofit genes for GFF1831 from Variovorax sp. SCN45

    TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3
    SEED: TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5466 NAD(P)H oxidoreductase YrkL @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 no 0.64
    2 GFF7242 hypothetical protein no 0.59
    3 GFF461 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.57
    4 GFF7356 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) no 0.56
    5 GFF1752 Cysteine dioxygenase (EC 1.13.11.20) no 0.56
    6 GFF4135 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme no 0.54
    7 GFF4916 FIG00959407: hypothetical protein no 0.53
    8 GFF5216 Metal dependent phosphohydrolase no 0.53
    9 GFF5073 3-oxoacyl-[ACP] synthase no 0.51
    10 GFF3566 Transcriptional regulator, LysR family no 0.51
    11 GFF1064 Transcriptional regulator, GntR family no 0.51
    12 GFF5380 BUG/TctC family periplasmic protein no 0.50
    13 GFF3924 Ferredoxin no 0.50
    14 GFF2482 Urease accessory protein UreE no 0.49
    15 GFF26 Esterase/lipase no 0.49
    16 GFF2480 Urease accessory protein UreG no 0.49
    17 GFF215 RNA polymerase sigma-54 factor RpoN no 0.48
    18 GFF839 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) no 0.48
    19 GFF5916 T6SS component TssA (ImpA) no 0.48
    20 GFF3399 Benzoate--CoA ligase (EC 6.2.1.25) no 0.48

    Or look for negative cofitness