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  • Top cofit genes for GFF1805 from Variovorax sp. SCN45

    Transcriptional regulator, GntR family
    SEED: predicted biotin regulatory protein BioR (GntR family)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4524 Uncharacterized symporter YhjB no 0.51
    2 GFF2117 KEGG: type IV fimbrial biogenesis protein FimT no 0.49
    3 GFF3376 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.49
    4 GFF4936 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.48
    5 GFF5843 hypothetical protein no 0.47
    6 GFF4322 Acyl-CoA dehydrogenase no 0.46
    7 GFF1137 FIG00348850: hypothetical protein no 0.44
    8 GFF231 DNA ligase (ATP) (EC 6.5.1.1) no 0.44
    9 GFF2340 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.44
    10 GFF6253 Phosphonate ABC transporter substrate-binding protein PhnD (TC 3.A.1.9.1) no 0.44
    11 GFF6442 Aldehyde dehydrogenase (EC 1.2.1.3) no 0.44
    12 GFF3105 Tas protein, an NADP(H)-dependent aldo-keto reductase no 0.43
    13 GFF3599 Rhodanese-related sulfurtransferase no 0.43
    14 GFF5434 FIG097052: Sugar transporter no 0.43
    15 GFF6247 ApaG protein no 0.43
    16 GFF1451 FIG00456379: hypothetical protein no 0.43
    17 GFF6530 Type I secretion outer membrane protein, TolC family no 0.43
    18 GFF1485 Transcriptional regulator, AraC family no 0.43
    19 GFF2342 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) no 0.43
    20 GFF5468 FAD/FMN-containing dehydrogenase no 0.42

    Or look for negative cofitness