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  • Top cofit genes for GFF1801 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2 Transcription accessory protein (S1 RNA-binding domain) 0.47 0.66
    2 GFF3974 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.66
    3 GFF6129 (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) no 0.63
    4 GFF945 Excinuclease ABC subunit B 0.57 0.63
    5 GFF2144 tRNA-dihydrouridine synthase DusB 0.29 0.63
    6 GFF2357 DNA repair protein RecN no 0.61
    7 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) 0.34 0.61
    8 GFF439 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) no 0.61
    9 GFF829 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) no 0.60
    10 GFF395 D-amino acid dehydrogenase (EC 1.4.99.6) no 0.60
    11 GFF2498 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) no 0.60
    12 GFF3867 Translation elongation factor LepA no 0.59
    13 GFF1289 Sulfate transport system permease protein CysW no 0.59
    14 GFF1002 HflK protein no 0.59
    15 GFF878 COGs COG2343 no 0.59
    16 GFF1589 FIG00765372: hypothetical protein no 0.59
    17 GFF5264 Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1) no 0.58
    18 GFF5675 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) no 0.58
    19 GFF3261 FIG003003: hypothetical protein no 0.58
    20 GFF849 putative carboxylesterase no 0.58

    Or look for negative cofitness