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  • Top cofit genes for GFF1789 from Variovorax sp. SCN45

    Hydroxymethylpyrimidine ABC transporter, transmembrane component
    SEED: Hydroxymethylpyrimidine ABC transporter, transmembrane component
    KEGG: sulfonate/nitrate/taurine transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4211 Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) no 0.58
    2 GFF6721 Transcriptional regulator, LysR family no 0.58
    3 GFF4274 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases no 0.52
    4 GFF2202 hypothetical protein no 0.51
    5 GFF5847 putative membrane protein no 0.51
    6 GFF1364 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.49
    7 GFF7124 Mobile element protein no 0.49
    8 GFF4229 Transcriptional regulator no 0.48
    9 GFF6407 Phytanoyl-CoA dioxygenase no 0.48
    10 GFF2656 Acyltransferase 3 no 0.48
    11 GFF5815 Uncharacterized MFS-type transporter no 0.48
    12 GFF959 Phage holin no 0.47
    13 GFF1983 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase (EC 3.1.3.82); Histidinol-phosphatase (EC 3.1.3.15) no 0.47
    14 GFF2931 no description no 0.47
    15 GFF1264 Transcriptional regulator, Xre family no 0.47
    16 GFF7185 no description no 0.46
    17 GFF6469 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter no 0.46
    18 GFF5920 no description no 0.46
    19 GFF1070 no description no 0.45
    20 GFF3348 Putative lipase no 0.45

    Or look for negative cofitness