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  • Top cofit genes for GFF1783 from Variovorax sp. SCN45

    Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO
    SEED: Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO
    KEGG: beta-hydroxylase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF101 Phosphate-binding DING protein (related to PstS) no 0.68
    2 GFF4827 FIG00348957: hypothetical protein no 0.64
    3 GFF1990 Transcriptional regulator, MerR family no 0.60
    4 GFF6467 Nucleoside-diphosphate-sugar epimerases no 0.59
    5 GFF199 Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA no 0.59
    6 GFF3574 hypothetical protein no 0.59
    7 GFF4494 hypothetical protein no 0.58
    8 GFF4828 no description no 0.57
    9 GFF3433 hypothetical protein no 0.57
    10 GFF1668 BUG/TctC family periplasmic protein no 0.56
    11 GFF3145 Two-component system response regulator QseB no 0.56
    12 GFF1644 hypothetical protein no 0.55
    13 GFF3505 hypothetical protein no 0.55
    14 GFF4972 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) no 0.55
    15 GFF640 no description no 0.55
    16 GFF12 Two-component system sensor histidine kinase 0.37 0.55
    17 GFF7326 Integrase no 0.55
    18 GFF6777 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) 0.33 0.54
    19 GFF2189 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) no 0.54
    20 GFF5624 Diaminopropionate ammonia-lyase (EC 4.3.1.15) no 0.54

    Or look for negative cofitness