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  • Top cofit genes for GFF175 from Variovorax sp. SCN45

    ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)
    SEED: ABC transporter permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1553 no description no 0.58
    2 GFF1612 no description no 0.57
    3 GFF4824 Transcriptional regulator, AraC family no 0.55
    4 GFF2968 MaoC-like dehydratase no 0.54
    5 GFF7016 FAD-dependent oxidoreductase no 0.53
    6 GFF1682 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) no 0.53
    7 GFF7242 hypothetical protein no 0.53
    8 GFF4034 Cobalt/zinc/cadmium resistance protein CzcD no 0.53
    9 GFF1237 Methionine sulfoxide reductase cytochrome b subunit no 0.52
    10 GFF4166 Cytidine deaminase (EC 3.5.4.5) no 0.52
    11 GFF3442 RidA/YER057c/UK114 superfamily protein no 0.52
    12 GFF6161 Hydroxymethylpyrimidine ABC transporter, ATPase component no 0.52
    13 GFF6168 Na(+) H(+) antiporter subunit G no 0.51
    14 GFF1092 Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1) no 0.51
    15 GFF3487 InterPro IPR005806 COGs COG2146 no 0.51
    16 GFF6323 Benzoate transport protein no 0.50
    17 GFF3094 17 kDa surface antigen no 0.50
    18 GFF1764 hypothetical protein no 0.50
    19 GFF5361 FIG146285: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases no 0.50
    20 GFF6584 Pyruvate kinase (EC 2.7.1.40) no 0.50

    Or look for negative cofitness