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  • Top cofit genes for GFF1743 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4007 Glutamate carboxypeptidase (EC 3.4.17.11) no 0.59
    2 GFF3825 Autolysin sensor kinase (EC 2.7.3.-) no 0.54
    3 GFF5416 Type IV fimbrial biogenesis protein PilW no 0.53
    4 GFF740 Uncharacterized protein YdcJ no 0.53
    5 GFF5319 Type IV pilus biogenesis protein PilM no 0.52
    6 GFF1136 hypothetical protein no 0.52
    7 GFF5414 hypothetical protein no 0.51
    8 GFF6786 CopG protein no 0.51
    9 GFF5323 Type IV pilus biogenesis protein PilQ no 0.51
    10 GFF993 Type IV pilus biogenesis protein PilF no 0.51
    11 GFF2519 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) no 0.51
    12 GFF5322 Type IV pilus biogenesis protein PilP no 0.51
    13 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.51
    14 GFF5419 Type IV pilus biogenesis protein PilE no 0.51
    15 GFF3826 Response regulator receiver:LytTr DNA-binding region no 0.51
    16 GFF6075 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB no 0.50
    17 GFF5417 hypothetical protein no 0.50
    18 GFF4507 no description no 0.50
    19 GFF6290 RNA polymerase sigma-54 factor RpoN no 0.50
    20 GFF6728 Probable VANILLIN dehydrogenase oxidoreductase protein (EC 1.-.-.-) no 0.49

    Or look for negative cofitness