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  • Top cofit genes for GFF173 from Variovorax sp. SCN45

    Hexuronate utilization operon transcriptional repressor ExuR

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF674 no description no 0.65
    2 GFF1423 Phenylacetate ABC transporter, permease protein 1 no 0.63
    3 GFF4070 no description no 0.63
    4 GFF4700 Various polyols ABC transporter, permease protein 1 no 0.63
    5 GFF6302 Transcriptional regulator, IclR family no 0.62
    6 GFF4701 Various polyols ABC transporter, permease protein 2 no 0.58
    7 GFF4688 Cobalt/zinc/cadmium efflux RND transporter, outer membrane protein CzcC no 0.58
    8 GFF1155 Putative transmembrane protein no 0.56
    9 GFF24 VgrG protein no 0.55
    10 GFF2607 hypothetical protein no 0.55
    11 GFF6467 Nucleoside-diphosphate-sugar epimerases no 0.55
    12 GFF830 ChlI component of cobalt chelatase involved in B12 biosynthesis no 0.55
    13 GFF117 no description no 0.55
    14 GFF1936 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) no 0.54
    15 GFF2423 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) no 0.54
    16 GFF5484 Protein translocase subunit YajC no 0.54
    17 GFF6476 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) no 0.54
    18 GFF1487 Tetrapartite efflux system component, FusD-like no 0.54
    19 GFF5548 Urea carboxylase (EC 6.3.4.6) without Allophanate hydrolase 2 domains no 0.53
    20 GFF736 hypothetical protein no 0.53

    Or look for negative cofitness