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  • Top cofit genes for GFF1704 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

    Ribose operon repressor
    SEED: Ribose operon repressor
    KEGG: LacI family transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4788 RNA polymerase sigma factor RpoS 0.95 0.72
    2 GFF4789 Lipoprotein NlpD 0.88 0.71
    3 GFF716 L,D-transpeptidase YbiS 0.57 0.66
    4 GFF1142 Single-stranded DNA-binding protein no 0.66
    5 GFF1936 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) no 0.66
    6 GFF189 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) no 0.65
    7 GFF3996 DNA-cytosine methyltransferase (EC 2.1.1.37) no 0.65
    8 GFF2907 HTH-type transcriptional regulator hdfR 0.62 0.65
    9 GFF3911 Histidinol-phosphate aminotransferase (EC 2.6.1.9) no 0.63
    10 GFF3022 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) no 0.63
    11 GFF4839 BarA sensory histidine kinase (= VarS = GacS) 0.87 0.63
    12 GFF4111 Curlin genes transcriptional activator 0.90 0.62
    13 GFF4579 tRNA-i(6)A37 methylthiotransferase no 0.61
    14 GFF1207 Probable regulatory protein no 0.61
    15 GFF3146 '3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)' transl_table=11 0.83 0.61
    16 GFF2906 Protein yifE 0.59 0.60
    17 GFF1675 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) 0.85 0.60
    18 GFF2554 Bdm protein no 0.59
    19 GFF2698 Exoribonuclease II (EC 3.1.13.1) 0.96 0.59
    20 GFF2452 Lysine decarboxylase, inducible (EC 4.1.1.18) no 0.58

    Or look for negative cofitness