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  • Top cofit genes for GFF1671 from Variovorax sp. SCN45

    3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
    SEED: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
    KEGG: 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5276 D-arabinitol 4-dehydrogenase (EC 1.1.1.11) no 0.68
    2 GFF2065 Peptidase, M23/M37 family no 0.67
    3 GFF2539 FAD/FMN-containing dehydrogenases no 0.66
    4 GFF571 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) no 0.66
    5 GFF1962 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) no 0.64
    6 GFF3100 Aspartyl protease no 0.64
    7 GFF417 Aspartate aminotransferase (AspB-4) (EC 2.6.1.1) 0.30 0.63
    8 GFF2822 Periplasmic hemin-binding protein no 0.63
    9 GFF3131 VgrG protein no 0.63
    10 GFF611 hypothetical protein no 0.62
    11 GFF6479 hypothetical protein no 0.61
    12 GFF1871 Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1) no 0.60
    13 GFF741 Transcriptional regulator, LysR family no 0.60
    14 GFF1257 Organosulfonate utilization protein SsuF no 0.60
    15 GFF460 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.58
    16 GFF3112 Methionine ABC transporter substrate-binding protein no 0.58
    17 GFF6087 Transcriptional regulator, AcrR family no 0.58
    18 GFF4792 PhnB protein no 0.58
    19 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) no 0.58
    20 GFF3053 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) no 0.57

    Or look for negative cofitness