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  • Top cofit genes for GFF1660 from Variovorax sp. SCN45

    Type IV fimbrial biogenesis protein PilY1
    SEED: Autotransporter adhesin

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2099 Acyl-CoA dehydrogenase no 0.64
    2 GFF6718 no description no 0.56
    3 GFF1688 FIG00828468: hypothetical protein no 0.54
    4 GFF6136 TRAP transporter solute receptor, unknown substrate 6 no 0.54
    5 GFF3548 hypothetical protein no 0.53
    6 GFF7027 no description no 0.52
    7 GFF1392 Monooxygenase, flavin-binding family no 0.52
    8 GFF4966 no description no 0.52
    9 GFF5010 Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5) no 0.51
    10 GFF1600 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) no 0.50
    11 GFF3162 Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15) no 0.50
    12 GFF4877 no description no 0.49
    13 GFF4830 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain no 0.49
    14 GFF4045 no description no 0.49
    15 GFF553 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) no 0.48
    16 GFF195 RidA/YER057c/UK114 superfamily, group 1 no 0.48
    17 GFF3313 Response regulator CreB of two-component signal transduction system CreBC no 0.48
    18 GFF2685 DNA internalization-related competence protein ComEC/Rec2 no 0.47
    19 GFF1686 Uncharacterized protein Bsu YraM no 0.47
    20 GFF2759 hypothetical protein no 0.47

    Or look for negative cofitness