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  • Top cofit genes for GFF1658 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2680 Protein of unknown function DUF1058 no 0.71
    2 GFF3963 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) no 0.61
    3 GFF1775 no description no 0.60
    4 GFF3974 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.59
    5 GFF2229 Pca regulon regulatory protein PcaR no 0.59
    6 GFF710 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) no 0.59
    7 GFF5546 Lactam utilization protein LamB 0.53 0.58
    8 GFF4634 Transketolase, C-terminal section (EC 2.2.1.1) no 0.58
    9 GFF4099 Ser/Thr protein phosphatase family protein no 0.58
    10 GFF3030 Uncharacterized protein ImpA no 0.57
    11 GFF5984 L-lactate dehydrogenase no 0.57
    12 GFF5788 FIG004556: membrane metalloprotease 0.39 0.57
    13 GFF1166 Murein-DD-endopeptidase (EC 3.4.99.-) no 0.56
    14 GFF1611 no description no 0.56
    15 GFF2190 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) 0.30 0.54
    16 GFF627 Secretion protein HlyD no 0.54
    17 GFF2855 Putative hydrolase or acyltransferase 0.14 0.53
    18 GFF669 BUG/TctC family periplasmic protein no 0.53
    19 GFF4945 probable GntR-family transcriptional regulator no 0.53
    20 GFF1479 Aldehyde dehydrogenase (EC 1.2.1.3) no 0.53

    Or look for negative cofitness