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  • Top cofit genes for PS417_08390 from Pseudomonas simiae WCS417

    transcription elongation factor GreB
    SEED: Transcription elongation factor GreB
    KEGG: transcription elongation factor GreB

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_13295 TetR family transcriptional regulator no 0.28
    2 PS417_18860 transcriptional regulator no 0.27
    3 PS417_04865 molybdenum cofactor biosynthesis protein MoaC 0.55 0.27
    4 PS417_10890 Deoxyribose 1-dehydrogenase, alpha subunit (from data) no 0.27
    5 PS417_21490 molybdopterin-guanine dinucleotide biosynthesis protein MobA no 0.26
    6 PS417_12200 microcin ABC transporter permease 0.59 0.25
    7 PS417_07260 2-deoxy-D-ribonate transporter 2 (from data) no 0.25
    8 PS417_14005 4-hydroxyphenylpyruvate dioxygenase 0.62 0.25
    9 PS417_10885 Deoxyribose 1-dehydrogenase, beta subunit (from data) 0.39 0.24
    10 PS417_12205 hypothetical protein no 0.24
    11 PS417_23730 LysR family transcriptional regulator 0.65 0.23
    12 PS417_21395 radical SAM protein no 0.23
    13 PS417_07265 2-deoxy-D-ribonate transporter 1 (from data) no 0.23
    14 PS417_12120 IclR family transcriptional regulator no 0.23
    15 PS417_22115 transcriptional regulator 0.59 0.23
    16 PS417_19965 histidine kinase no 0.23
    17 PS417_21010 ribonuclease activity regulator protein RraA 0.62 0.22
    18 PS417_12180 ABC transporter substrate-binding protein no 0.22
    19 PS417_07240 Transcriptional regulator of deoxyribose catabolism (from data) no 0.22
    20 PS417_20840 hypothetical protein no 0.22

    Or look for negative cofitness