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  • Top cofit genes for GFF1632 from Variovorax sp. SCN45

    RNA polymerase ECF-type sigma factor
    SEED: RNA polymerase sigma-70 factor, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1711 DUF3701 domain / Site-specific tyrosine recombinase no 0.61
    2 GFF4843 Conjugative transfer protein TrbF no 0.59
    3 GFF6597 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF no 0.58
    4 GFF629 hypothetical protein no 0.57
    5 GFF4688 Cobalt/zinc/cadmium efflux RND transporter, outer membrane protein CzcC no 0.57
    6 GFF6194 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) no 0.56
    7 GFF2355 A/G-specific adenine glycosylase (EC 3.2.2.-) no 0.55
    8 GFF5976 Transcriptional regulator, AraC family no 0.55
    9 GFF3238 no description no 0.54
    10 GFF2849 hypothetical protein no 0.54
    11 GFF2607 hypothetical protein no 0.53
    12 GFF2237 Intracellular protease no 0.53
    13 GFF4583 TRAP-type C4-dicarboxylate transport system, large permease component no 0.52
    14 GFF6302 Transcriptional regulator, IclR family 0.25 0.52
    15 GFF7249 no description no 0.52
    16 GFF124 Beta-ureidopropionase (EC 3.5.1.6) no 0.52
    17 GFF4812 no description no 0.52
    18 GFF4131 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.51
    19 GFF6684 ABC transporter, ATP-binding protein no 0.51
    20 GFF7102 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60) no 0.51

    Or look for negative cofitness