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  • Top cofit genes for GFF1620 from Variovorax sp. SCN45

    Large exoproteins involved in heme utilization or adhesion

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5400 Demethylmenaquinone methyltransferase-like protein no 0.55
    2 GFF7359 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) no 0.54
    3 GFF2484 Urease beta subunit (EC 3.5.1.5) no 0.49
    4 GFF6850 Hemolysin activation/secretion protein associated with VreARI signalling system no 0.47
    5 GFF3371 FIG00456413: hypothetical protein no 0.45
    6 GFF7372 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) no 0.45
    7 GFF3814 OpgC protein no 0.45
    8 GFF4547 no description no 0.44
    9 GFF147 Transcriptional regulator no 0.44
    10 GFF4206 gamma-BHC dehydrochlorinase no 0.44
    11 GFF4379 y4eB gene in pNGR234a homolog no 0.43
    12 GFF5370 TPR domain protein, putative component of TonB system no 0.43
    13 GFF7223 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) no 0.42
    14 GFF7047 hypothetical protein no 0.42
    15 GFF4555 Putative transmembrane protein no 0.42
    16 GFF5119 Ammonium transporter no 0.42
    17 GFF2418 BUG/TctC family periplasmic protein no 0.42
    18 GFF562 Type IV pilus biogenesis protein PilE no 0.41
    19 GFF2393 Biopolymer transport protein ExbD/TolR no 0.41
    20 GFF6792 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) no 0.41

    Or look for negative cofitness