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  • Top cofit genes for GFF1617 from Variovorax sp. SCN45

    Phosphonate uptake and metabolism regulator, LysR-family
    SEED: Transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4553 RNA chaperone ProQ no 0.63
    2 GFF2129 small multidrug resistance family (SMR) protein no 0.62
    3 GFF1857 FIG00553873: hypothetical protein no 0.61
    4 GFF6547 Glutathione S-transferase (EC 2.5.1.18) no 0.60
    5 GFF5528 Conjugative transfer protein TrbL no 0.58
    6 GFF4965 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.58
    7 GFF7259 no description no 0.57
    8 GFF5154 DNA-binding transcriptional regulator, MocR family / aminotransferase domain no 0.57
    9 GFF3001 Metal chaperone, involved in Zn homeostasis no 0.55
    10 GFF2540 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases no 0.55
    11 GFF2630 Ligand-binding SRPBCC domain protein family no 0.54
    12 GFF7391 hypothetical protein no 0.54
    13 GFF699 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.53
    14 GFF3097 hypothetical protein no 0.52
    15 GFF2547 Type I antifreeze protein no 0.52
    16 GFF3063 mandelate racemase/muconate lactonizing enzyme family protein no 0.52
    17 GFF3984 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) no 0.52
    18 GFF365 Acyl-CoA dehydrogenase no 0.52
    19 GFF2079 BUG/TctC family periplasmic protein no 0.52
    20 GFF5788 FIG004556: membrane metalloprotease no 0.51

    Or look for negative cofitness