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  • Top cofit genes for GFF1600 from Variovorax sp. SCN45

    Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1)
    SEED: High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
    KEGG: branched-chain amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5243 General secretion pathway protein H no 0.66
    2 GFF3228 hypothetical protein no 0.60
    3 GFF2920 TRAP-type C4-dicarboxylate transport system, large permease component no 0.60
    4 GFF2719 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) no 0.57
    5 GFF2129 small multidrug resistance family (SMR) protein no 0.57
    6 GFF6202 Unknown substrate:proton symporter no 0.57
    7 GFF2759 hypothetical protein no 0.56
    8 GFF3144 hypothetical protein no 0.56
    9 GFF6243 Ku domain protein no 0.56
    10 GFF4045 no description no 0.55
    11 GFF4877 no description no 0.54
    12 GFF6566 hypothetical protein no 0.54
    13 GFF7351 1,2-phenylacetyl-CoA epoxidase, subunit E (EC 1.14.13.149) no 0.54
    14 GFF7062 probable carboxylesterase no 0.54
    15 GFF4071 Butyryl-CoA dehydrogenase (EC 1.3.99.2) no 0.53
    16 GFF4334 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.53
    17 GFF2571 Glutaredoxin 3 (Grx3) no 0.53
    18 GFF4023 no description no 0.53
    19 GFF7212 Nitrilotriacetate monooxygenase [FMNH2] no 0.52
    20 GFF4214 L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 2 AapM 0.43 0.52

    Or look for negative cofitness