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  • Top cofit genes for GFF1599 from Variovorax sp. SCN45

    Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
    SEED: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1178 hypothetical protein no 0.59
    2 GFF7067 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.52
    3 GFF6820 hypothetical protein no 0.49
    4 GFF1953 hypothetical protein no 0.48
    5 GFF1645 Sigma factor PvdS, controling pyoverdin biosynthesis no 0.47
    6 GFF3054 Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14) no 0.47
    7 GFF4239 Mll5186 protein no 0.46
    8 GFF1534 Transcriptional regulator, LysR family no 0.45
    9 GFF1175 Two-component system response regulator QseB no 0.45
    10 GFF1965 Magnesium and cobalt efflux protein CorC no 0.44
    11 GFF499 hypothetical protein no 0.44
    12 GFF4244 Acid phosphatase (EC 3.1.3.2) no 0.43
    13 GFF4154 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.43
    14 GFF458 Aldoxime dehydratase no 0.43
    15 GFF5190 L-arabinose 1-dehydrogenase (EC 1.1.1.376) no 0.43
    16 GFF1304 Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4) 0.48 0.42
    17 GFF1207 no description no 0.42
    18 GFF6015 Transcriptional regulator PA0877, LysR family no 0.42
    19 GFF2102 no description no 0.42
    20 GFF3381 Broad-specificity amino acid ABC transporter, substrate-binding protein no 0.42

    Or look for negative cofitness