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  • Top cofit genes for GFF1569 from Variovorax sp. SCN45

    BUG/TctC family periplasmic protein
    SEED: Tricarboxylate transport protein TctC

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5320 Type IV pilus biogenesis protein PilN no 0.70
    2 GFF6182 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) no 0.70
    3 GFF993 Type IV pilus biogenesis protein PilF no 0.69
    4 GFF5323 Type IV pilus biogenesis protein PilQ no 0.69
    5 GFF5322 Type IV pilus biogenesis protein PilP no 0.68
    6 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.68
    7 GFF2509 Type IV fimbrial assembly protein PilC no 0.68
    8 GFF2510 Type IV fimbrial assembly, ATPase PilB no 0.68
    9 GFF2379 Serine/threonine protein kinase no 0.68
    10 GFF5319 Type IV pilus biogenesis protein PilM no 0.68
    11 GFF3826 Response regulator receiver:LytTr DNA-binding region no 0.67
    12 GFF5321 Type IV pilus biogenesis protein PilO no 0.67
    13 GFF2508 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) no 0.67
    14 GFF4485 FIG00715336: hypothetical protein no 0.67
    15 GFF5490 Uncharacterized protein with LysM domain, COG1652 no 0.67
    16 GFF5416 Type IV fimbrial biogenesis protein PilW no 0.67
    17 GFF33 Type IV pilus biogenesis protein PilZ no 0.67
    18 GFF5415 Type IV fimbrial biogenesis protein PilV no 0.66
    19 GFF5419 Type IV pilus biogenesis protein PilE no 0.66
    20 GFF6075 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB no 0.66

    Or look for negative cofitness