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  • Top cofit genes for GFF1555 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: putative LysR-family transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1635 Polyketide synthase modules and related proteins no 0.57
    2 GFF6389 Amidohydrolase domain protein no 0.54
    3 GFF1279 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) no 0.50
    4 GFF4269 Uncharacterized SAM-dependent O-methyltransferase no 0.50
    5 GFF6610 putative lipoprotein no 0.48
    6 GFF1217 Transcriptional regulator RpiR in protein degradation cluster no 0.48
    7 GFF3542 hypothetical protein no 0.47
    8 GFF3313 Response regulator CreB of two-component signal transduction system CreBC no 0.47
    9 GFF5093 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60) no 0.47
    10 GFF1868 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) no 0.46
    11 GFF1117 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) no 0.45
    12 GFF5935 VgrG protein no 0.45
    13 GFF6705 hypothetical protein no 0.45
    14 GFF2558 DNA protection during starvation protein no 0.44
    15 GFF5614 hypothetical protein no 0.44
    16 GFF5117 Transcriptional regulator, LysR family no 0.44
    17 GFF5227 Putative diheme cytochrome c-553 no 0.44
    18 GFF1527 Ferrichrome-iron receptor no 0.43
    19 GFF5402 Transcriptional regulator, IclR family no 0.43
    20 GFF6734 Transcriptional regulator, AraC family no 0.43

    Or look for negative cofitness