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  • Top cofit genes for GFF155 from Variovorax sp. SCN45

    ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines)
    SEED: Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
    KEGG: peptide/nickel transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4580 hypothetical protein no 0.64
    2 GFF2597 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) no 0.57
    3 GFF7245 universal stress protein, UspA family no 0.55
    4 GFF3450 Transcriptional regulator, LacI family no 0.55
    5 GFF5274 Various polyols ABC transporter, permease protein 2 no 0.55
    6 GFF5929 Mll2356 protein no 0.55
    7 GFF2728 hypothetical protein no 0.54
    8 GFF5678 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) no 0.53
    9 GFF4488 Metal-binding GTPase YjiA no 0.52
    10 GFF4635 Transketolase, N-terminal section (EC 2.2.1.1) no 0.52
    11 GFF4638 CDP-glucose 4,6-dehydratase (EC 4.2.1.45) no 0.51
    12 GFF665 hypothetical protein no 0.51
    13 GFF2173 no description no 0.51
    14 GFF4632 Glycosyl transferase, family 2 no 0.51
    15 GFF4334 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.50
    16 GFF491 no description no 0.50
    17 GFF1971 Creatinine amidohydrolase (EC 3.5.2.10) no 0.50
    18 GFF4907 NAD(P) transhydrogenase C-domain of subunit alpha (EC 1.6.1.2) no 0.50
    19 GFF4851 Coupling protein VirD4, ATPase required for T-DNA transfer no 0.50
    20 GFF7282 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) no 0.50

    Or look for negative cofitness