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  • Top cofit genes for GFF1530 from Variovorax sp. SCN45

    Nucleoside-diphosphate-sugar epimerases
    SEED: NAD-dependent epimerase/dehydratase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6077 G:T/U mismatch-specific uracil/thymine DNA-glycosylase (EC 3.2.2.27) no 0.57
    2 GFF140 Putative transport protein no 0.55
    3 GFF3648 putative c'cytochrome 0.19 0.53
    4 GFF2288 Glutathione-regulated potassium-efflux system protein KefC 0.33 0.53
    5 GFF2171 MBL-fold metallohydrolase SPO0683 no 0.53
    6 GFF258 Ribosomal protein L3 N(5)-glutamine methyltransferase (EC 2.1.1.298) 0.46 0.52
    7 GFF7413 no description no 0.51
    8 GFF759 FIG01121861: hypothetical protein no 0.50
    9 GFF827 Predicted cobalt transporter CbtC no 0.49
    10 GFF6963 Cytochrome c oxidase (cbb3-type) subunit CcoO (EC 1.9.3.1) no 0.48
    11 GFF458 Aldoxime dehydratase no 0.48
    12 GFF2163 hypothetical protein no 0.46
    13 GFF6536 protein of unknown function DUF1345 no 0.46
    14 GFF6804 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.46
    15 GFF6678 Putative inner membrane protein no 0.46
    16 GFF80 no description no 0.46
    17 GFF7058 Zinc-binding GTPase YciC 0.36 0.45
    18 GFF5776 Gluconokinase (EC 2.7.1.12) no 0.45
    19 GFF2521 FIG00931781: hypothetical protein no 0.44
    20 GFF4106 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) no 0.44

    Or look for negative cofitness