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  • Top cofit genes for GFF1509 from Variovorax sp. SCN45

    ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines)
    SEED: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
    KEGG: peptide/nickel transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5014 Acyl-CoA dehydrogenase no 0.53
    2 GFF266 RND efflux system, inner membrane transporter no 0.53
    3 GFF1604 Prolidase (EC 3.4.13.9) no 0.52
    4 GFF6545 Uncharacterized MFS-type transporter no 0.49
    5 GFF4079 Cytochrome c4 0.41 0.48
    6 GFF5435 Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), plant type no 0.47
    7 GFF5661 hypothetical protein no 0.47
    8 GFF3821 RND efflux system, inner membrane transporter no 0.47
    9 GFF6144 2-aminoethylphosphonate ABC transporter substrate-binding protein no 0.47
    10 GFF682 2-hydroxychromene-2-carboxylate isomerase family protein no 0.46
    11 GFF2789 Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29) no 0.46
    12 GFF794 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.45
    13 GFF5510 protein of unknown function DUF306, Meta and HslJ no 0.45
    14 GFF7106 BUG/TctC family periplasmic protein no 0.45
    15 GFF7189 dioxygenase, TauD/TfdA family no 0.45
    16 GFF1838 Manganese transport protein MntH 0.23 0.44
    17 GFF356 L-asparaginase (EC 3.5.1.1) 0.29 0.44
    18 GFF6081 Peptidase S1 and S6, chymotrypsin/Hap no 0.44
    19 GFF3154 no description no 0.44
    20 GFF5163 Soluble lytic murein transglycosylase (EC 4.2.2.n1) no 0.44

    Or look for negative cofitness