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  • Top cofit genes for GFF1508 from Variovorax sp. SCN45

    ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines)
    SEED: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)
    KEGG: peptide/nickel transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2189 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) no 0.69
    2 GFF4828 no description no 0.65
    3 GFF151 FIG00460174: hypothetical protein no 0.65
    4 GFF1678 Transcriptional regulator, GntR family no 0.65
    5 GFF2074 hypothetical protein no 0.65
    6 GFF3495 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.63
    7 GFF3389 Glycosyl transferases, related to UDP-glucuronosyltransferase no 0.63
    8 GFF3105 Tas protein, an NADP(H)-dependent aldo-keto reductase no 0.61
    9 GFF5468 FAD/FMN-containing dehydrogenase no 0.61
    10 GFF1665 Nicotinamidase/isochorismatase family protein no 0.60
    11 GFF1329 Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12) no 0.60
    12 GFF1878 Bll6165 protein 0.31 0.59
    13 GFF4643 no description no 0.59
    14 GFF1853 no description no 0.59
    15 GFF5127 no description no 0.58
    16 GFF5673 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) no 0.58
    17 GFF2107 no description no 0.57
    18 GFF4688 Cobalt/zinc/cadmium efflux RND transporter, outer membrane protein CzcC no 0.57
    19 GFF1761 Putative hemolysin no 0.56
    20 GFF5095 hypothetical protein no 0.56

    Or look for negative cofitness