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  • Top cofit genes for GFF1489 from Variovorax sp. SCN45

    Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like
    SEED: Outer membrane component of tripartite multidrug resistance system

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6432 no description no 0.63
    2 GFF1682 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) no 0.61
    3 GFF7156 hypothetical protein no 0.56
    4 GFF1930 RTX toxin transporter, ATP-binding protein no 0.56
    5 GFF6535 Permease of the drug/metabolite transporter (DMT) superfamily no 0.55
    6 GFF6969 hypothetical protein no 0.55
    7 GFF7253 Mobile element protein no 0.55
    8 GFF2113 NADH dehydrogenase (EC 1.6.99.3) no 0.54
    9 GFF2867 DNA recombination protein RmuC no 0.53
    10 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) no 0.52
    11 GFF3956 no description no 0.52
    12 GFF4961 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.51
    13 GFF253 Transcriptional regulator, LysR family no 0.51
    14 GFF4936 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.51
    15 GFF1988 Serine/threonine protein kinase no 0.51
    16 GFF7328 no description no 0.51
    17 GFF3249 Guanyl-specific ribonuclease (EC 3.1.27.3) 0.31 0.50
    18 GFF3559 no description no 0.50
    19 GFF2997 FIG027190: Putative transmembrane protein no 0.50
    20 GFF2231 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) no 0.50

    Or look for negative cofitness